Experiment summary for ENCSR285WZV

Summary

Status
released
Assay
RNA-seq (polyA plus RNA-seq)
Biosample summary
Mus musculus C57BL/6 hindbrain embryo (16.5 days)
Biosample Type
tissue
Replication type
isogenic
Description
PolyA RNA-Seq from oligo-dT primed Total RNA on embryonic 16.5 day mouse hindbrain
Nucleic acid type
polyadenylated mRNA
RNA integrity number
9.3 [1-1]10 [2-1]
Library starting quantity
10ng
Size range
>200
Extraction method
Ambion mirVana
Fragmentation methods
chemical (Nextera tagmentation)
Size selection method
SPRI beads
Strand specificity
Non-strand-specific
Spike-ins datasets
ENCSR884LPM

Attribution

ENCODE3 project
Lab
Barbara Wold, Caltech
Award
U54HG006998 (Richard Myers, HAIB)
Project
ENCODE
External resources
Date submitted
September 24, 2015
Date released
October 13, 2015
Related datasets
ENCSR328UYN 
RNA-seq on mouse hindbrain (embryonic 10.5 day - postnatal).
, ENCSR774QPF 
Reference epigenome for mouse hindbrain (16.5 day embryonic)
Tags
Search for all Experiment with internal tag ENCYCLOPEDIAv5Search for all Experiment with internal tag ENCYCLOPEDIAv4

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Library
11strain B6NCrl mixed sex embryo (16.5 days) hindbrain tissueENCBS436LSHENCLB662TIG
21strain B6NCrl mixed sex embryo (16.5 days) hindbrain tissueENCBS281ZLIENCLB987VRV