Experiment summary for ENCSR265OMO

doi:10.17989/ENCSR265OMO

Summary

Status
released
Assay
whole-genome shotgun bisulfite sequencing (WGBS)
Biosample summary
Mus musculus strain B6NCrl heart tissue embryo (15.5 days)
Biosample Type
tissue
Replication type
isogenic
Description
Whole genome bisulfite-seq on embryonic 15.5 day mouse heart
Nucleic acid type
DNA
Size range
180-500
Lysis method
QIAGEN DNeasy Blood & Tissue Kit
Fragmentation methods
shearing (Covaris S2)
Size selection method
Sera-mag SpeedBeads

Attribution

ENCODE3 project
Lab
Joe Ecker, Salk
Award
U54HG006997 (Bing Ren, UCSD)
Project
ENCODE
External resources
Aliases
joe-ecker:E15_5_HT
Date submitted
April 28, 2015
Date released
June 23, 2015
Organism Development Series
ENCSR781CPK 
Reference Epigenome
ENCSR520JSM 
Submitter comment
Fastq files ENCFF056IAF, ENCFF906CFP, ENCFF817MUC, and ENCFF072FHV contain reads of mixed lengths. Read lengths followed by respective number of reads: ENCFF056IAF (117, 138107905), (125, 196941499), (145, 192682496); ENCFF906CFP (117, 143659805), (125, 198660436), (145, 196855711); ENCFF817MUC (117, 183078032), (125, 198956732), (130, 165703094); ENCFF072FHV (117, 192971599), (130, 187667841), (132, 196068442).
Tags
Search for all Experiment with internal tag ENCYCLOPEDIAv2

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Library
11Mus musculus strain B6NCrl mixed sex embryo (15.5 days) heart tissueENCBS595EMKENCLB857VNP
22Mus musculus strain B6NCrl mixed sex embryo (15.5 days) heart tissueENCBS909LOFENCLB494KTO
21Mus musculus strain B6NCrl mixed sex embryo (15.5 days) heart tissueENCBS909LOFENCLB154WOQ
12Mus musculus strain B6NCrl mixed sex embryo (15.5 days) heart tissueENCBS595EMKENCLB466JGR