Experiment summary for ENCSR254YRM
doi:10.17989/ENCSR254YRM
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- CTCF
- Biosample summary
- Homo sapiens liver tissue female child (6 years) and with nonobstructive coronary artery disease; liver tissue male adult (32 years)
- Biosample Type
- tissue
- Replication type
- anisogenic
- Description
- CTCF ChIP-seq on human liver
- Nucleic acid type
- DNA
- Size range
- 150-350
- Platform
- Illumina Genome Analyzer IIx
- Controls
Attribution
ENCODE3 project
- Lab
- Michael Snyder, Stanford
- Award
- U54HG006996 (Michael Snyder, Stanford)
- Project
- ENCODE
- External resources
- Aliases
- michael-snyder:liver-CTCF_07-729_gaiix
- Date submitted
- July 30, 2014
- Date released
- April 14, 2017
- Annotation (gkmsvm-model)
- Annotation (BPNet-model)
- Submitter comment
- IMPORTANT! Bioreplicate 2 was previously annotated as liver from a 4 year old female. It has now been corrected to be liver from a 32 year old adult male.
- Tags
- Registry of cCREs
- Factorbook
Encyclopedia Integration
Anisogenic replicates
Anisogenic replicate | Technical replicate | Summary | Biosample | Antibody | Library |
|---|---|---|---|---|---|
| 1 | 1 | Homo sapiens female child (6 years) liver tissue | ENCBS045RNA | ENCAB000AXU | ENCLB531NQK |
| 2 | 1 | Homo sapiens male adult (32 years) with nonobstructive coronary artery disease; liver tissue | ENCBS046RNA | ENCAB000AXU | ENCLB761UMI |