Experiment summary for ENCSR247ZVM

Summary

Status
released
Assay
ChIP-seq
Target
eGFP-cato
Biosample summary
Drosophila melanogaster strain cato-GFP whole organism embryo (0-16 hours) genetically modified using site-specific recombination
Biosample Type
whole organisms
Replication type
isogenic
Description
ChIP-seq on transgenic flies expressing cato-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
Nucleic acid type
DNA
Size range
200-800
Fragmentation method
sonication (Bioruptor generic)
Size selection method
SPRI
Strand specificity
Non-strand-specific
Controls

Attribution

modERN project
Lab
Kevin White, UChicago
Award
U41HG007355 (Robert Waterston, UW)
Project
modERN
Aliases
kevin-white:cato-GFP
Date submitted
April 9, 2016
Date released
July 6, 2016
Submitter comment
ENCFF187OFF, ENCFF077YWR were revoked because a software bug accidentally truncated the file content. The submitters have provided replacement files.

Isogenic replicates

Isogenic replicateTechnical replicateSummaryBiosampleModificationsAntibodyLibrary
31strain cato-GFP mixed sex embryo (0-16 hours) whole organism genetically modified (insertion) using site-specific recombination targeting eGFP-catoENCBS372VNMENCGM447YVFENCAB728YTOENCLB652ZEF
11strain cato-GFP mixed sex embryo (0-16 hours) whole organism genetically modified (insertion) using site-specific recombination targeting eGFP-catoENCBS572BVUENCGM447YVFENCAB728YTOENCLB060NLC