Experiment summary for ENCSR238QRG

doi:10.17989/ENCSR238QRG

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
TBX3
Biosample summary
Homo sapiens HepG2
Biosample Type
cell line
Replication type
isogenic
Description
TBX3 ChIP-seq on human HepG2
Nucleic acid type
DNA
Size range
450-650

Attribution

ENCODE3 project
Lab
Michael Snyder, Stanford
Award
U54HG006996 (Michael Snyder, Stanford)
Project
ENCODE
External resources
Aliases
michael-snyder:ChIPss-552
Date submitted
May 13, 2016
Date released
January 31, 2017
Submitter comment
Please note that the 'mixed platform' warning comes from the archived fastqs that were sequenced on the HiSeq2000 platform that if used, should be paired with the matching HiSeq2000 control ENCSR121CWV. The pipeline was run on the fastqs and controls sequenced on the HiSeq4000 platform for consistency.
Tags
Search for all Experiment with internal tag RegulomeDB_2_0Search for all Experiment with internal tag ENCYCLOPEDIAv4Search for all Experiment with internal tag RegulomeDB_1_0Search for all Experiment with internal tag ENCYCLOPEDIAv5

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Antibody
Library
21HepG2 cell lineENCBS225ERFENCAB320XLXENCLB802CQC
11HepG2 cell lineENCBS591PPPENCAB320XLXENCLB611SYU