Experiment summary for ENCSR238QRG
doi:10.17989/ENCSR238QRG
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- TBX3
- Biosample summary
- Homo sapiens HepG2
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- TBX3 ChIP-seq on human HepG2
- Nucleic acid type
- DNA
- Size range
- 450-650
- Platform
- Illumina HiSeq 4000, Illumina HiSeq 2000
- Controls
Attribution
ENCODE3 project
- Lab
- Michael Snyder, Stanford
- Award
- U54HG006996 (Michael Snyder, Stanford)
- Project
- ENCODE
- External resources
- Aliases
- michael-snyder:ChIPss-552
- Date submitted
- May 13, 2016
- Date released
- January 31, 2017
- Annotation (gkmsvm-model)
- Annotation (BPNet-model)
- Submitter comment
- Please note that the 'mixed platform' warning comes from the archived fastqs that were sequenced on the HiSeq2000 platform that if used, should be paired with the matching HiSeq2000 control ENCSR121CWV. The pipeline was run on the fastqs and controls sequenced on the HiSeq4000 platform for consistency.
- Tags
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Antibody | Library |
|---|---|---|---|---|---|
| 2 | 1 | Homo sapiens HepG2 cell line | ENCBS225ERF | ENCAB320XLX | ENCLB802CQC |
| 1 | 1 | Homo sapiens HepG2 cell line | ENCBS591PPP | ENCAB320XLX | ENCLB611SYU |