1. Experiments
  2. polyA plus RNA-seq
  3. Homo sapiens
  4. smooth muscle cell

Experiment summary for ENCSR236URT

doi:10.17989/ENCSR236URT

Summary

Status
released
Assay
polyA plus RNA-seq
Biosample summary
Homo sapiens smooth muscle cell originated from H9
Biosample Type
in vitro differentiated cells
Replication type
isogenic
Description
PolyA RNA-Seq from oligo-dT primed Total RNA on smooth muscle cells
Nucleic acid type
polyadenylated mRNA
Library starting quantity
0.35ng
Size range
>200
Extraction method
Ambion mirVana
Fragmentation methods
chemical (Nextera tagmentation)
Size selection method
SPRI beads
Strand specificity
unstranded
Spike-ins datasets
ENCSR884LPM

Attribution

ENCODE3 project
Lab
Barbara Wold, Caltech
Award
U54HG006998 (Richard Myers, HAIB)
Project
ENCODE
External resources
Date submitted
April 19, 2016
Date released
May 3, 2016
Reference Epigenome
ENCSR116JEF 
Tags
Visit collection page for SESCCSearch for all Experiment with internal tag ENCYCLOPEDIAv1Search for all Experiment with internal tag ENCYCLOPEDIAv2

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Library
21Homo sapiens female embryo (5 days) smooth muscle in vitro differentiated cells originated from H9ENCBS899TTJENCLB894YYX
11Homo sapiens female embryo (5 days) smooth muscle in vitro differentiated cells originated from H9ENCBS780PCJENCLB889PET

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