Experiment summary for ENCSR233JPT
doi:10.17989/ENCSR233JPT
Summary
- Status
- released
- Assay
- PAS-seq
- Biosample summary
- Homo sapiens foreskin keratinocyte male newborn (2-4 days) treated with 1.2 mM calcium for 4.5 days
- Biosample Type
- primary cell
- Replication type
- anisogenic
- Description
- PAS-seq on primary keratinocytes in day 5.0 of differentiation
- Treatments
- 1.2 mM calcium (CHEBI:86158) for 4.5 days
- Nucleic acid type
- RNA
- RNA integrity number
- 8 [2-1]8.9 [1-1]
- Size range
- 150-1000
- Extraction method
- Qiagen RNA extraction
- Strand specificity
- unstranded
- Platform
- Illumina HiSeq 4000
Attribution
Genomics of Gene Regulation Project
- Lab
- Paul Khavari, Stanford
- Award
- U01HG007919 (Michael Snyder, Stanford)
- Project
- GGR
- Aliases
- michael-snyder:ggr-skin-passeq-day50
- Date submitted
- January 27, 2017
- Date released
- April 10, 2018
- Treatment Time Series
- ENCSR057HZF
Anisogenic replicates
Anisogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 2 | 1 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 4.5 days | ENCBS379WNC | ENCLB295MWP |
| 1 | 1 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 4.5 days | ENCBS616IKM | ENCLB073RGU |