Experiment summary for ENCSR231AGR

Summary

Status
released
Assay
ChIP-seq
Target
Control
Biosample summary
Caenorhabditis elegans strain OP660 (unc-119(tm4063); wgIs660 [hmg-4::TY1::EGFP::3xFLAG + unc-119(+)]) whole organism early embryo (0 hours) using egg bleaching genetically modified using bombardment
Biosample Type
whole organisms
Replication type
unreplicated
Description
This is the ChIP-seq control of transgenic worms expressing HMG-4-eGFP fusion proteins.
Nucleic acid type
DNA
Size range
200-800
Fragmentation method
sonication (Bioruptor generic)
Size selection method
SPRI
Strand specificity
Non-strand-specific

Attribution

modERN project
Lab
Kevin White, UChicago
Award
U41HG007355 (Robert Waterston, UW)
Project
modERN
Aliases
valerie-reinke:HMG-4_OP660_EE_INPUT
Date released
September 19, 2018

Isogenic replicates

Isogenic replicateTechnical replicateSummaryBiosampleModificationsLibrary
11strain OP660 (unc-119(tm4063); wgIs660 [hmg-4::TY1::EGFP::3xFLAG + unc-119(+)]) mixed sex early embryo (0 hours) using egg bleaching whole organism genetically modified (insertion) using bombardment targeting eGFP-hmg-4ENCBS965XCRENCGM580RRVENCLB263GXJ