Experiment summary for ENCSR225LQP
Summary
- Status
- revoked
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- ztf-16
- Biosample summary
- Caenorhabditis elegans strain OP494 (unc-119(tm4063) III; wgIs494) whole organism hermaphrodite late embryo 5 hours post synchronization using egg bleaching genetically modified (insertion) using bombardment targeting C. elegans ztf-16
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq of transgenic worms expressing ZTF-16-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Fragmentation methods
- sonication (generic microtip)
- Size selection method
- SPRI beads
- Controls
Attribution
modERN project
- Lab
- Valerie Reinke, Yale
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- Aliases
- kevin-white:ZTF-16-OP494-LE
- Date released
- May 24, 2016
- Submitter comment
- ENCFF397HQQ, ENCFF485MPP were revoked because a software bug accidentally truncated the file content. The submitters will provide replacement files.
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 2 | 1 | Caenorhabditis elegans strain OP494 (unc-119(tm4063) III; wgIs494) hermaphrodite late embryo 5 hours post synchronization using egg bleaching whole organism genetically modified (insertion) using bombardment targeting C. elegans ztf-16 | ENCBS066XFJ | ENCGM642POY | ENCAB728YTO | ENCLB461IJQ |
| 1 | 1 | Caenorhabditis elegans strain OP494 (unc-119(tm4063) III; wgIs494) hermaphrodite late embryo 5 hours post synchronization using egg bleaching whole organism genetically modified (insertion) using bombardment targeting C. elegans ztf-16 | ENCBS658NLC | ENCGM642POY | ENCAB728YTO | ENCLB501JWO |