1. Experiments
  2. ChIP-seq
  3. Homo sapiens
  4. K562

Experiment summary for ENCSR220YXI

doi:10.17989/ENCSR220YXI

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
PRPF4
Biosample summary
Homo sapiens K562
Biosample Type
cell line
Replication type
isogenic
Description
PRPF4 ChIP-seq in K562
Nucleic acid type
DNA
Size range
200-400
Lysis method
SDS
Size selection method
gel
Controls

Attribution

ENCODE3 project
Lab
Xiang-Dong Fu, UCSD
Award
U54HG007005 (Brenton Graveley, UConn)
Project
ENCODE
External resources
Aliases
xiang-dong-fu:PRPF4_ChIP_K562_batch2
Date submitted
March 4, 2016
Date released
March 7, 2017
Annotation (gkmsvm-model)
Submitter comment
As of March 2nd, 2017, the lab has submitted updated fastqs, requiring new alignments.
Tags
Search for all Experiment with internal tag RegulomeDB_1_0Search for all Experiment with internal tag RegulomeDB_2_0Search for all Experiment with internal tag RegulomeDB_2_1Search for all Experiment with internal tag ENCYCLOPEDIAv2Search for all Experiment with internal tag ENCYCLOPEDIAv1Search for all Experiment with internal tag RegulomeDB_2_2Visit collection page for ENCORE

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Antibody
Library
11Homo sapiens K562 cell lineENCBS075XHEENCAB624FBHENCLB800ELT
21Homo sapiens K562 cell lineENCBS952HNJENCAB624FBHENCLB316FFY

Files

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Output type
Replicates

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