Experiment summary for ENCSR220XSM

Summary

Status
released
Assay
PRO-cap
Biosample summary
Homo sapiens K562
Biosample Type
cell line
Replication type
unreplicated
Description
A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in K562 cells.
Nucleic acid type
RNA
Average fragment size
42
Size selection method
Streptavidin magnetic beads
Library construction method
capped RNA enrichment
Strand specificity
Strand-specific (reverse)

Attribution

ENCODE4 project
Lab
Haiyuan Yu, Cornell
Award
UM1HG009393 (John Lis, Cornell)
Project
ENCODE
Aliases
haiyuan-yu:procap-experiment-C1
Date released
October 26, 2024
Submitter comment
Experiment performed by Sagar R. Shah and preprocessed by Alden Leung and You Chen.

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Library
11Homo sapiens K562 cell lineENCBS165TOOENCLB682NEV
12Homo sapiens K562 cell lineENCBS165TOOENCLB967SPT