Experiment summary for ENCSR220ASC
doi:10.17989/ENCSR220ASC
Summary
- Status
- released
- Assay
- ATAC-seq
- Biosample summary
- Homo sapiens A549
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- ATAC-seq on A549 cell line treated with 100 nM dexamethasone for 0 hours.
- Nucleic acid type
- DNA
- Size range
- >200
- Lysis method
- 0.01% digitonin
- Fragmentation methods
- chemical (Nextera tagmentation)
- Size selection method
- AMPure XP bead purification
- Platform
- Illumina HiSeq 4000
Attribution
Genomics of Gene Regulation Project
- Lab
- Tim Reddy, Duke
- Award
- U01HG007900 (Tim Reddy, Duke)
- Project
- GGR
- External resources
- Aliases
- tim-reddy:A549.atacseq.dex.00h
- Date submitted
- March 28, 2018
- Date released
- April 23, 2018
- Treatment Time Series
- ENCSR385LRX
- Annotation (gkmsvm-model)
- Annotation (ChromBPNet-model)
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 2 | 1 | Homo sapiens A549 cell line | ENCBS586UFT | ENCLB768JUJ |
| 3 | 1 | Homo sapiens A549 cell line | ENCBS565TIR | ENCLB514OGC |
| 1 | 1 | Homo sapiens A549 cell line | ENCBS213TPT | ENCLB522HCS |