Experiment summary for ENCSR215QTA

doi:10.17989/ENCSR215QTA

Summary

Status
released
Assay
whole-genome shotgun bisulfite sequencing (WGBS)
Biosample summary
Mus musculus strain B6NCrl midbrain tissue embryo (15.5 days)
Biosample Type
tissue
Replication type
isogenic
Description
Whole genome bisulfite-seq on embryonic 15.5 day mouse midbrain
Nucleic acid type
DNA
Size range
180-500
Lysis method
QIAGEN DNeasy Blood & Tissue Kit
Fragmentation methods
shearing (Covaris S2)
Size selection method
Sera-mag SpeedBeads

Attribution

ENCODE3 project
Lab
Joe Ecker, Salk
Award
U54HG006997 (Bing Ren, UCSD)
Project
ENCODE
External resources
Aliases
joe-ecker:E15_5_MB
Date submitted
April 29, 2015
Date released
June 23, 2015
Organism Development Series
ENCSR414HVF 
Reference Epigenome
ENCSR453LDG 
Submitter comment
Fastq files ENCFF208JMN, ENCFF495GRC, and ENCFF618YSU contain reads of mixed lengths. Read lengths followed by respective number of reads: ENCFF208JMN (108, 211151094), (130, 425081487); ENCFF495GRC (109, 211199336), (130, 215552816), (139, 422210237); ENCFF618YSU (130, 199128027), (139, 214570449).
Tags
Search for all Experiment with internal tag ENCYCLOPEDIAv2

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Library
21Mus musculus strain B6NCrl mixed sex embryo (15.5 days) midbrain tissueENCBS381PEJENCLB624VSR
11Mus musculus strain B6NCrl mixed sex embryo (15.5 days) midbrain tissueENCBS190ETJENCLB224DGR
12Mus musculus strain B6NCrl mixed sex embryo (15.5 days) midbrain tissueENCBS190ETJENCLB813KHU
22Mus musculus strain B6NCrl mixed sex embryo (15.5 days) midbrain tissueENCBS381PEJENCLB064PKH