Experiment summary for ENCSR213XFQ

doi:10.17989/ENCSR213XFQ

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
dao-5
Biosample summary
Caenorhabditis elegans strain OP252 whole organism hermaphrodite L4/young adult genetically modified (insertion) using bombardment targeting C. elegans dao-5
Biosample Type
whole organisms
Replication type
isogenic
Description
ChIP-seq of transgenic worms expressing DAO-5-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
Nucleic acid type
DNA
Fragmentation methods
sonication (generic microtip)
Size selection method
SPRI beads
Controls

Attribution

modERN project
Lab
Valerie Reinke, Yale
Award
U41HG007355 (Robert Waterston, UW)
Project
modERN
External resources
Aliases
kevin-white:DAO-5-OP252-L4-yAd
Date submitted
August 24, 2015
Date released
May 10, 2016
Submitter comment
ENCFF693PGA, ENCFF877WWB, ENCFF737JEE, ENCFF802EEW were revoked because a software bug accidentally truncated the file content. The submitters will provide replacement files.

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Antibody
Library
21Caenorhabditis elegans strain OP252 hermaphrodite L4/young adult whole organism genetically modified (insertion) using bombardment targeting C. elegans dao-5ENCBS577ICIENCGM938PUSENCAB728YTOENCLB476NLU
11Caenorhabditis elegans strain OP252 hermaphrodite L4/young adult whole organism genetically modified (insertion) using bombardment targeting C. elegans dao-5ENCBS810FJHENCGM938PUSENCAB728YTOENCLB993BYZ