Experiment summary for ENCSR213XFQ
doi:10.17989/ENCSR213XFQ
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- dao-5
- Biosample summary
- Caenorhabditis elegans strain OP252 whole organism hermaphrodite L4/young adult genetically modified (insertion) using bombardment targeting C. elegans dao-5
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq of transgenic worms expressing DAO-5-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Fragmentation methods
- sonication (generic microtip)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 2500
- Controls
Attribution
modERN project
- Lab
- Valerie Reinke, Yale
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:DAO-5-OP252-L4-yAd
- Date submitted
- August 24, 2015
- Date released
- May 10, 2016
- Submitter comment
- ENCFF693PGA, ENCFF877WWB, ENCFF737JEE, ENCFF802EEW were revoked because a software bug accidentally truncated the file content. The submitters will provide replacement files.
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
---|---|---|---|---|---|---|
2 | 1 | Caenorhabditis elegans strain OP252 hermaphrodite L4/young adult whole organism genetically modified (insertion) using bombardment targeting C. elegans dao-5 | ENCBS577ICI | ENCGM938PUS | ENCAB728YTO | ENCLB476NLU |
1 | 1 | Caenorhabditis elegans strain OP252 hermaphrodite L4/young adult whole organism genetically modified (insertion) using bombardment targeting C. elegans dao-5 | ENCBS810FJH | ENCGM938PUS | ENCAB728YTO | ENCLB993BYZ |