Experiment summary for ENCSR198EIH

doi:10.17989/ENCSR198EIH

Summary

Status
archived
Assay
single-cell RNA sequencing assay (scRNA-seq)
Biosample summary
Mus musculus strain B6NCrl pyramidal neuron adult (8 months)
Biosample Type
primary cell
Replication type
unreplicated
Description
RNA-seq of a single pyramidal neuron cell from cerebral cortex layer V in a C57Bl6 mouse (LC759)
Nucleic acid type
RNA
Library starting quantity
1cells
Size range
>200
Lysis method
Clontech UltraLow for Illumina sequencing
Fragmentation methods
chemical (Nextera tagmentation)
Size selection method
SPRI beads
Strand specificity
unstranded
Spike-ins datasets
ENCSR013YHQ, ENCSR133ALU
Controls

Attribution

ENCODE3 project
Lab
Barbara Wold, Caltech
Award
U54HG006998 (Richard Myers, HAIB)
Project
ENCODE
External resources
Date submitted
June 25, 2015
Date released
October 13, 2015
Submitter comment
Estimates of technical measurement error from low input mass RNA-seq libraries.

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Library
11Mus musculus strain B6NCrl adult (8 months) pyramidal neuron primary cellENCBS237ZAGENCLB735YLI