Experiment summary for ENCSR192NDP
doi:10.17989/ENCSR192NDP
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- snpc-1.3
- Biosample summary
- Caenorhabditis elegans strain YL485 whole organism hermaphrodite young adult genetically modified (insertion) using bombardment targeting C. elegans snpc-1.3
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq of transgenic worms expressing F08F3.9-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Fragmentation methods
- sonication (generic microtip)
- Size selection method
- E-Gel
- Platform
- Illumina Genome Analyzer IIx
- Controls
Attribution
modERN project
- Lab
- Valerie Reinke, Yale
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:F08F3.9-YL485-yAd
- Date submitted
- July 30, 2015
- Date released
- November 22, 2017
- Submitter comment
- This experiment was completed during modENCODE and has lower read depth than the current modERN standard.
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
---|---|---|---|---|---|---|
2 | 1 | Caenorhabditis elegans strain YL485 hermaphrodite young adult whole organism genetically modified (insertion) using bombardment targeting C. elegans snpc-1.3 | ENCBS769NFD | ENCGM774OGC | ENCAB435FBQ | ENCLB736MEG |
1 | 1 | Caenorhabditis elegans strain YL485 hermaphrodite young adult whole organism genetically modified (insertion) using bombardment targeting C. elegans snpc-1.3 | ENCBS002TTF | ENCGM774OGC | ENCAB435FBQ | ENCLB730DMF |