Experiment summary for ENCSR185QFX

doi:10.17989/ENCSR185QFX

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
ZNF549
Biosample summary
Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF549
Biosample Type
cell line
Replication type
isogenic
Description
eGFP-ZNF549 ChIP-seq on human HEK293 cells.
Nucleic acid type
DNA
Size range
450-650

Attribution

ENCODE3 project
Lab
Michael Snyder, Stanford
Award
U54HG006996 (Michael Snyder, Stanford)
Project
ENCODE
External resources
Aliases
michael-snyder:HEK_eGFP-ZNF549_FRT_ChIP
Date submitted
December 16, 2016
Date released
July 11, 2018
Submitter comment
The inconsistent platform warning is due to the archived replicate 1 fastqs being sequenced on HiSeq2000. Those files can use the pooled HiSeq2000 controls (ENCSR598OXI) for further analysis.
Tags
Search for all Experiment with internal tag RegulomeDB_2_0Search for all Experiment with internal tag RegulomeDB_1_0Search for all Experiment with internal tag ENCYCLOPEDIAv5

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Antibody
Library
31Homo sapiens HEK293 cell line genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF549ENCBS716EYGENCGM698AYSENCAB615WUNENCLB847ZIR
21Homo sapiens HEK293 cell line genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF549ENCBS327AYJENCGM698AYSENCAB615WUNENCLB794PLP