Experiment summary for ENCSR173IEA
doi:10.17989/ENCSR173IEA
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- CTCF
- Biosample summary
- Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 7 hours
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- CTCF ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 7 hours.
- Treatments
- 100 nM dexamethasone (CHEBI:41879) for 7 hours
- Nucleic acid type
- DNA
- Library starting quantity
- 7ng
- Size range
- >200
- Fragmentation methods
- sonication (Bioruptor Twin)
- Size selection method
- dual SPRI
- Platform
- Illumina HiSeq 2500
- Controls
Attribution
Genomics of Gene Regulation Project
- Lab
- Tim Reddy, Duke
- Award
- U01HG007900 (Tim Reddy, Duke)
- Project
- GGR
- External resources
- Aliases
- tim-reddy:CTCF.t7
- Date submitted
- December 15, 2016
- Date released
- December 20, 2016
- Treatment Time Series
- ENCSR738NGQ
- Annotation (BPNet-model)
- Tags
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Antibody | Library |
|---|---|---|---|---|---|
| 2 | 1 | Homo sapiens A549 cell line treated with 100 nM dexamethasone (agonist) for 7 hours | ENCBS802OFY | ENCAB809HPR | ENCLB917NNS |
| 1 | 1 | Homo sapiens A549 cell line treated with 100 nM dexamethasone (agonist) for 7 hours | ENCBS582VVW | ENCAB809HPR | ENCLB683MOK |
| 3 | 1 | Homo sapiens A549 cell line treated with 100 nM dexamethasone (agonist) for 7 hours | ENCBS522XYT | ENCAB809HPR | ENCLB973KEN |