Experiment summary for ENCSR160GVO

doi:10.17989/ENCSR160GVO

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
CTCF
Biosample summary
Homo sapiens HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens CTCF treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours
Biosample Type
cell line
Replication type
unreplicated
Treatments
1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours
Nucleic acid type
DNA
Size range
200-600
Controls

Attribution

ENCODE4 project
Lab
Bradley Bernstein, Broad
Award
UM1HG009390 (Bradley Bernstein, Broad)
Project
ENCODE
External resources
Aliases
bradley-bernstein:Project Element 7435
Date released
July 21, 2022
Gene Silencing Series
ENCSR529DLA 
Annotation (physical modeling)
Annotation (BPNet-model)
Tags
Search for all Experiment with internal tag RegulomeDB_2_2Search for all Experiment with internal tag DegronSearch for all Experiment with internal tag RegulomeDB_2_1

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Antibody
Library
12Homo sapiens HCT116 cell line genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, genetically modified (insertion) using CRISPR targeting H. sapiens CTCF treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hoursENCBS088IDXENCGM628IQH, ENCGM628AIRENCAB719MQZENCLB600DTX
11Homo sapiens HCT116 cell line genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, genetically modified (insertion) using CRISPR targeting H. sapiens CTCF treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hoursENCBS088IDXENCGM628IQH, ENCGM628AIRENCAB719MQZENCLB577ZMM