1. Experiments
  2. ChIP-seq
  3. Homo sapiens
  4. K562

Experiment summary for ENCSR158RYZ

doi:10.17989/ENCSR158RYZ

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
ZBTB40
Biosample summary
Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB40
Biosample Type
cell line
Replication type
isogenic
Description
eGFP-ZBTB40 ChIP-seq on human K562
Nucleic acid type
DNA
Size range
200-800
Fragmentation methods
sonication (Bioruptor generic)
Size selection method
SPRI beads
Controls

Attribution

ENCODE3 project
Lab
Kevin White, UChicago
Award
U54HG006996 (Michael Snyder, Stanford)
Project
ENCODE
External resources
Aliases
kevin-white:ZBTB40_K562_CRISPR
Date submitted
March 14, 2016
Date released
December 1, 2017
Annotation (gkmsvm-model)
Annotation (physical modeling)
Tags
Search for all Experiment with internal tag RegulomeDB_1_0Search for all Experiment with internal tag RegulomeDB_2_0Search for all Experiment with internal tag ENCYCLOPEDIAv2Search for all Experiment with internal tag RegulomeDB_2_1Search for all Experiment with internal tag RegulomeDB_2_2

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Antibody
Library
31Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB40ENCBS136FFTENCGM198CRCENCAB728YTOENCLB068BIS
41Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB40ENCBS127TDCENCGM198CRCENCAB728YTOENCLB575LDV
11Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB40ENCBS307VCXENCGM198CRCENCAB728YTOENCLB252FKQ

Files

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Output type
Replicates

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