Experiment summary for ENCSR158RYZ
doi:10.17989/ENCSR158RYZ
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- ZBTB40
- Biosample summary
- Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB40
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- eGFP-ZBTB40 ChIP-seq on human K562
- Nucleic acid type
- DNA
- Size range
- 200-800
- Fragmentation methods
- sonication (Bioruptor generic)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 2500, Illumina HiSeq 2000
- Controls
Attribution
ENCODE3 project
- Lab
- Kevin White, UChicago
- Award
- U54HG006996 (Michael Snyder, Stanford)
- Project
- ENCODE
- External resources
- References
- Aliases
- kevin-white:ZBTB40_K562_CRISPR
- Date submitted
- March 14, 2016
- Date released
- December 1, 2017
- Annotation (gkmsvm-model)
- Annotation (physical modeling)
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
---|---|---|---|---|---|---|
3 | 1 | Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB40 | ENCBS136FFT | ENCGM198CRC | ENCAB728YTO | ENCLB068BIS |
4 | 1 | Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB40 | ENCBS127TDC | ENCGM198CRC | ENCAB728YTO | ENCLB575LDV |
1 | 1 | Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB40 | ENCBS307VCX | ENCGM198CRC | ENCAB728YTO | ENCLB252FKQ |