Experiment summary for ENCSR156APP
doi:10.17989/ENCSR156APP
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- PTBP1
- Biosample summary
- Homo sapiens HepG2
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- PTBP1 ChIP-seq on HepG2
- Nucleic acid type
- DNA
- Size range
- 200-400
- Lysis method
- SDS
- Size selection method
- gel
- Platform
- Illumina HiSeq 2000, Illumina HiSeq 2500
- Controls
Attribution
ENCODE3 project
- Lab
- Xiang-Dong Fu, UCSD
- Award
- U54HG007005 (Brenton Graveley, UConn)
- Project
- ENCODE
- External resources
- Aliases
- xiang-dong-fu:PTBP1_Batch3
- Date submitted
- March 21, 2016
- Date released
- January 19, 2018
- Annotation (gkmsvm-model)
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Antibody | Library |
---|---|---|---|---|---|
1 | 1 | Homo sapiens HepG2 cell line | ENCBS495SHD | ENCAB553IRN | ENCLB285ZFN |
2 | 1 | Homo sapiens HepG2 cell line | ENCBS654ERN | ENCAB553IRN | ENCLB310SOO |