Experiment summary for ENCSR151WSI

Summary

Status
released
Assay
ChIP-seq
Biosample summary
Drosophila melanogaster VK00033 whole organism embryo (0-24 hours) genetically modified using site-specific recombination
Biosample Type
whole organisms
Replication type
isogenic
Description
ChIP-seq on transgenic flies expressing CG30403-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
Nucleic acid type
DNA
Size range
200-800
Fragmentation method
sonication (Bioruptor generic)
Size selection method
SPRI
Strand specificity
Non-strand-specific
Controls

Attribution

modERN project
Lab
Kevin White, UChicago
Award
U41HG007355 (Robert Waterston, UW)
Project
modERN
Aliases
kevin-white:CG30403-GFP
Date submitted
August 3, 2016
Date released
September 29, 2016
Submitter comment
ENCFF338UIB, ENCFF111KGP were revoked because a software bug accidentally truncated the file content. The submitters have provided replacement files.

Isogenic replicates

Isogenic replicateTechnical replicateSummaryBiosampleModificationsAntibodyLibrary
31strain CG30403-GFP mixed sex embryo (0-24 hours) whole organism genetically modified (insertion) using site-specific recombination targeting eGFP-CG30403ENCBS034NAQENCGM611LTRENCAB728YTOENCLB491XPN
21strain CG30403-GFP mixed sex embryo (0-24 hours) whole organism genetically modified (insertion) using site-specific recombination targeting eGFP-CG30403ENCBS011NDSENCGM611LTRENCAB728YTOENCLB235LWX
11strain CG30403-GFP mixed sex embryo (0-24 hours) whole organism genetically modified (insertion) using site-specific recombination targeting eGFP-CG30403ENCBS125KBRENCGM611LTRENCAB728YTOENCLB228DKS