Experiment summary for ENCSR149GUT

doi:10.17989/ENCSR149GUT

Summary

Status
released
Assay
whole-genome shotgun bisulfite sequencing (WGBS)
Biosample summary
Mus musculus strain B6NCrl heart tissue embryo (13.5 days)
Biosample Type
tissue
Replication type
isogenic
Description
Whole genome bisulfite-seq on embryonic 13.5 day mouse heart
Nucleic acid type
DNA
Size range
180-500
Lysis method
QIAGEN DNeasy Blood & Tissue Kit
Fragmentation methods
shearing (Covaris S2)
Size selection method
Sera-mag SpeedBeads

Attribution

ENCODE3 project
Lab
Joe Ecker, Salk
Award
U54HG006997 (Bing Ren, UCSD)
Project
ENCODE
External resources
Aliases
joe-ecker:E13_5_HT
Date submitted
August 14, 2015
Date released
August 18, 2015
Organism Development Series
ENCSR781CPK 
Reference Epigenome
ENCSR107EDN 
Submitter comment
Fastq files ENCFF070DXX, ENCFF652QDS, ENCFF136ISB, and ENCFF287MQU contain reads of mixed lengths. Read lengths followed by respective number of reads: ENCFF070DXX (130, 201833048), (136, 424817193); ENCFF652QDS (130, 208410381), (136, 223741495); ENCFF136ISB (130, 208887880), (136, 428245778); ENCFF287MQU (130, 465743068), (136, 207369124).
Tags
Search for all Experiment with internal tag ENCYCLOPEDIAv2

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Library
21Mus musculus strain B6NCrl mixed sex embryo (13.5 days) heart tissueENCBS814PLTENCLB054AXP
11Mus musculus strain B6NCrl mixed sex embryo (13.5 days) heart tissueENCBS490ZWZENCLB909QYX
22Mus musculus strain B6NCrl mixed sex embryo (13.5 days) heart tissueENCBS814PLTENCLB086MBV
12Mus musculus strain B6NCrl mixed sex embryo (13.5 days) heart tissueENCBS490ZWZENCLB576AVF