Experiment summary for ENCSR148VUP

doi:10.17989/ENCSR148VUP

Summary

Status
released
Assay
DNase-seq
Biosample summary
Homo sapiens hematopoietic multipotent progenitor cell treated with interleukin-3 for 4 days, kit ligand for 4 days, hydrocortisone succinate for 4 days, erythropoietin for 4 days
Biosample Type
in vitro differentiated cells
Replication type
isogenic
Description
DNase-seq on 25 year old human adult male hematopoietic multipotent progenitor cell line
Treatments
interleukin-3 (UniProtKB:P08700) for 4 days, kit ligand (UniProtKB:P21583) for 4 days, hydrocortisone succinate (CHEBI:31677) for 4 days, erythropoietin (CHEBI:81579) for 4 days
Nucleic acid type
DNA

Attribution

ENCODE3 project
Lab
John Stamatoyannopoulos, UW
Award
U54HG007010 (John Stamatoyannopoulos, UW)
Project
ENCODE
External resources
Date submitted
March 30, 2015
Date released
August 31, 2015
Treatment Time Series
ENCSR963OVY 
Annotation (gkmsvm-model)
Annotation (ChromBPNet-model)
Tags
Search for all Experiment with internal tag RegulomeDB_1_0Search for all Experiment with internal tag ccre_inputv2Search for all Experiment with internal tag RegulomeDB_2_0Search for all Experiment with internal tag RegulomeDB_2_1Search for all Experiment with internal tag ccre_inputv1Search for all Experiment with internal tag ENCYCLOPEDIAv2Search for all Experiment with internal tag ENCYCLOPEDIAv1Search for all Experiment with internal tag RegulomeDB_2_2

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Library
11Homo sapiens male adult (25 years) hematopoietic multipotent progenitor in vitro differentiated cells treated with interleukin-3 for 4 days, kit ligand for 4 days, hydrocortisone succinate for 4 days, erythropoietin for 4 daysENCBS924ALKENCLB200PCY
21Homo sapiens male adult (25 years) hematopoietic multipotent progenitor in vitro differentiated cells treated with interleukin-3 for 4 days, kit ligand for 4 days, hydrocortisone succinate for 4 days, erythropoietin for 4 daysENCBS721DUIENCLB809AHE