Experiment summary for ENCSR136WGP
doi:10.17989/ENCSR136WGP
Summary
- Status
- released
- Assay
- RNA-seq (total RNA-seq)
- Biosample summary
- Homo sapiens SK-N-DZ treated with dimethyl sulfoxide for 72 hours
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- The libraries contained in this experiment come from independent growths of cell line SK-N-DZ, a metastatic neuroblastoma from a 2 year old female. They are stranded PE101 Illumina Hi-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
- Treatments
- dimethyl sulfoxide (CHEBI:28262) for 72 hours
- Nucleic acid type
- RNA
- Depleted in
- rRNA
- Size range
- >200
- Fragmentation methods
- shearing (Covaris generic)
- Size selection method
- other
- Strand specificity
- Strand-specific (reverse)
- Spike-ins datasets
- ENCSR156CIL
- Platform
- Illumina HiSeq 2000
Attribution
ENCODE3 project
- Lab
- Thomas Gingeras, CSHL
- Award
- U54HG007004 (Thomas Gingeras, CSHL)
- Project
- ENCODE
- External resources
- References
- Date submitted
- June 17, 2014
- Date released
- June 30, 2014
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 1 | 1 | Homo sapiens SK-N-DZ cell line treated with dimethyl sulfoxide for 72 hours | ENCBS520AAA | ENCLB210NQG |
| 2 | 1 | Homo sapiens SK-N-DZ cell line treated with dimethyl sulfoxide for 72 hours | ENCBS521AAA | ENCLB120HZY |