1. Experiments
  2. DNase-seq
  3. Homo sapiens
  4. A549

Experiment summary for ENCSR136DNA

doi:10.17989/ENCSR136DNA

Summary

Status
released
Assay
DNase-seq
Control type
control
Biosample summary
Homo sapiens A549
Biosample Type
cell line
Replication type
isogenic
Description
DNase-seq on A549 cell line treated with 100 nM dexamethasone for 0 hours.
Nucleic acid type
DNA
Library starting quantity
85ng
Size selection method
gel

Attribution

Genomics of Gene Regulation Project
Lab
Tim Reddy, Duke
Award
U01HG007900 (Tim Reddy, Duke)
Project
GGR
External resources
Aliases
tim-reddy:t00_dnase_seq
Date submitted
March 2, 2016
Date released
May 5, 2016
Treatment Time Series
ENCSR482QFS 
Submitter comment
DNase-seq libraries were sequenced with four barcodes per lane to generate 50 bp single-end reads, of which only the first 20 bp were genomic DNA due to MmeI digestion (see Song and Crawford 2010).
Tags
Search for all Experiment with internal tag RegulomeDB_2_0Search for all Experiment with internal tag RegulomeDB_1_0

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Library
21Homo sapiens A549 cell lineENCBS976TIOENCLB640BMZ
51Homo sapiens A549 cell lineENCBS478IHDENCLB437SPK
31Homo sapiens A549 cell lineENCBS797SEZENCLB314IRK
41Homo sapiens A549 cell lineENCBS720VDHENCLB614NVZ

Files

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Output type
Replicates

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