Experiment summary for ENCSR134NKA
doi:10.17989/ENCSR134NKA
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- Nf-YB
- Biosample summary
- Drosophila melanogaster strain Nf-YB-GFP whole organism embryo (0-24 hours) genetically modified (insertion) using site-specific recombination targeting D. melanogaster Nf-YB
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Size range
- 200-800
- Fragmentation methods
- sonication (Bioruptor generic)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 4000
- Controls
Attribution
modERN project
- Lab
- Kevin White, UChicago
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:Nf-YB-GFP
- Date submitted
- April 12, 2019
- Date released
- May 16, 2019
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 2 | 1 | Drosophila melanogaster strain Nf-YB-GFP mixed sex embryo (0-24 hours) whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster Nf-YB | ENCBS565YYS | ENCGM757IJP | ENCAB728YTO | ENCLB592FCR |
| 1 | 1 | Drosophila melanogaster strain Nf-YB-GFP mixed sex embryo (0-24 hours) whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster Nf-YB | ENCBS087VZQ | ENCGM757IJP | ENCAB728YTO | ENCLB555TCN |
| 3 | 1 | Drosophila melanogaster strain Nf-YB-GFP mixed sex embryo (0-24 hours) whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster Nf-YB | ENCBS893OCY | ENCGM757IJP | ENCAB728YTO | ENCLB681PVW |