Experiment summary for ENCSR125ZYC
doi:10.17989/ENCSR125ZYC
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- KLF9
- Biosample summary
- Homo sapiens MCF-7 stably expressing KLF9
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- eGFP-KLF9 ChIP-seq on human MCF-7
- Nucleic acid type
- DNA
- Size range
- 200-800
- Fragmentation methods
- sonication (Bioruptor generic)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 2000, Illumina HiSeq 2500
- Controls
Attribution
ENCODE3 project
- Lab
- Kevin White, UChicago
- Award
- U54HG006996 (Michael Snyder, Stanford)
- Project
- ENCODE
- External resources
- Aliases
- kevin-white:KLF9_MCF7
- Date submitted
- March 14, 2016
- Date released
- June 13, 2016
- Annotation (gkmsvm-model)
- Annotation (BPNet-model)
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
---|---|---|---|---|---|---|
3 | 1 | Homo sapiens MCF-7 cell line stably expressing C-terminal eGFP-tagged KLF9 | ENCBS418UGY | ENCGM189CRW | ENCAB728YTO | ENCLB804LOH |
4 | 1 | Homo sapiens MCF-7 cell line stably expressing C-terminal eGFP-tagged KLF9 | ENCBS180ROE | ENCGM189CRW | ENCAB728YTO | ENCLB215RJH |