Experiment summary for ENCSR111QAW
doi:10.17989/ENCSR111QAW
Summary
- Status
- released
- Assay
- ChIP-seq (Histone ChIP-seq)
- Target
- H3K9ac
- Biosample summary
- Homo sapiens SK-N-MC
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- ChIP-seq against H3K9ac using SK-N-MC cell line which was previously described as a neuroepithelioma (ATCC HTB-10). However recent evidence reveals it is Ewing's Sarcoma (www.ncbi.nlm.nih.gov/pubmed/15548687, www.ncbi.nlm.nih.gov/pubmed/25453903, www.ncbi.nlm.nih.gov/biosample/3151999).
- Nucleic acid type
- DNA
- Library starting quantity
- 25.08ng [2-1]84ng [1-1]
- Size range
- 200-600
- Fragmentation methods
- sonication (generic)
- Platform
- Illumina HiSeq 2000, Illumina HiSeq 2500
- Controls
Attribution
ENCODE3 project
- Lab
- Bradley Bernstein, Broad
- Award
- U54HG006991 (Bradley Bernstein, Broad)
- Project
- ENCODE
- External resources
- Aliases
- bradley-bernstein:Project Element 873
- Date submitted
- February 19, 2015
- Date released
- January 10, 2017
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Antibody | Library |
---|---|---|---|---|---|
2 | 1 | Homo sapiens SK-N-MC cell line | ENCBS203EZT | ENCAB000ANK | ENCLB606MTX |
1 | 1 | Homo sapiens SK-N-MC cell line | ENCBS273LIC | ENCAB000ANK | ENCLB361FKJ |
2 | 2 | Homo sapiens SK-N-MC cell line | ENCBS203EZT | ENCAB000ANK | ENCLB338VPC |