Experiment summary for ENCSR111QAW

doi:10.17989/ENCSR111QAW

Summary

Status
released
Assay
ChIP-seq (Histone ChIP-seq)
Target
H3K9ac
Biosample summary
Homo sapiens SK-N-MC
Biosample Type
cell line
Replication type
isogenic
Description
ChIP-seq against H3K9ac using SK-N-MC cell line which was previously described as a neuroepithelioma (ATCC HTB-10). However recent evidence reveals it is Ewing's Sarcoma (www.ncbi.nlm.nih.gov/pubmed/15548687, www.ncbi.nlm.nih.gov/pubmed/25453903, www.ncbi.nlm.nih.gov/biosample/3151999).
Nucleic acid type
DNA
Library starting quantity
25.08ng [2-1]84ng [1-1]
Size range
200-600
Fragmentation methods
sonication (generic)
Controls

Attribution

ENCODE3 project
Lab
Bradley Bernstein, Broad
Award
U54HG006991 (Bradley Bernstein, Broad)
Project
ENCODE
External resources
Aliases
bradley-bernstein:Project Element 873
Date submitted
February 19, 2015
Date released
January 10, 2017
Tags
Search for all Experiment with internal tag ENCYCLOPEDIAv1Search for all Experiment with internal tag ENCYCLOPEDIAv2

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Antibody
Library
21Homo sapiens SK-N-MC cell lineENCBS203EZTENCAB000ANKENCLB606MTX
11Homo sapiens SK-N-MC cell lineENCBS273LICENCAB000ANKENCLB361FKJ
22Homo sapiens SK-N-MC cell lineENCBS203EZTENCAB000ANKENCLB338VPC