Experiment summary for ENCSR110CKX
doi:10.17989/ENCSR110CKX
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- him-1
- Biosample summary
- Caenorhabditis elegans strain YL577 whole organism hermaphrodite young adult 47 hours post synchronization at L1 larva starved after bleaching stage genetically modified (insertion) using bombardment targeting C. elegans him-1
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq of transgenic worms expressing HIM-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Fragmentation methods
- sonication (generic microtip)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 2500
- Controls
Attribution
modERN project
- Lab
- Valerie Reinke, Yale
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:HIM-1-YL577-yAd
- Date submitted
- August 24, 2015
- Date released
- May 10, 2016
- Submitter comment
- ENCFF068NPK, ENCFF125VYK, ENCFF515TFJ, ENCFF114IBS were revoked because a software bug accidentally truncated the file content. The submitters have provided replacement files.
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
---|---|---|---|---|---|---|
1 | 1 | Caenorhabditis elegans strain YL577 hermaphrodite young adult 47 hours post synchronization at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans him-1 | ENCBS043GBS | ENCGM610HSE | ENCAB728YTO | ENCLB327HTF |
2 | 1 | Caenorhabditis elegans strain YL577 hermaphrodite young adult 47 hours post synchronization at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans him-1 | ENCBS740ICN | ENCGM610HSE | ENCAB728YTO | ENCLB999ZZJ |