Experiment summary for ENCSR110CKX

doi:10.17989/ENCSR110CKX

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
him-1
Biosample summary
Caenorhabditis elegans strain YL577 whole organism hermaphrodite young adult 47 hours post synchronization at L1 larva starved after bleaching stage genetically modified (insertion) using bombardment targeting C. elegans him-1
Biosample Type
whole organisms
Replication type
isogenic
Description
ChIP-seq of transgenic worms expressing HIM-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
Nucleic acid type
DNA
Fragmentation methods
sonication (generic microtip)
Size selection method
SPRI beads
Controls

Attribution

modERN project
Lab
Valerie Reinke, Yale
Award
U41HG007355 (Robert Waterston, UW)
Project
modERN
External resources
Aliases
kevin-white:HIM-1-YL577-yAd
Date submitted
August 24, 2015
Date released
May 10, 2016
Submitter comment
ENCFF068NPK, ENCFF125VYK, ENCFF515TFJ, ENCFF114IBS were revoked because a software bug accidentally truncated the file content. The submitters have provided replacement files.

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Antibody
Library
11Caenorhabditis elegans strain YL577 hermaphrodite young adult 47 hours post synchronization at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans him-1ENCBS043GBSENCGM610HSEENCAB728YTOENCLB327HTF
21Caenorhabditis elegans strain YL577 hermaphrodite young adult 47 hours post synchronization at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans him-1ENCBS740ICNENCGM610HSEENCAB728YTOENCLB999ZZJ