Experiment summary for ENCSR109IQO
doi:10.17989/ENCSR109IQO
Summary
- Status
- released
- Assay
- RNA-seq (total RNA-seq)
- Biosample summary
- Homo sapiens K562
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- RNA Evaluation K562 Long Total from Graveley
- Nucleic acid type
- RNA
- RNA integrity number
- 9.4 [2-1]9.5 [1-1]
- Depleted in
- rRNA
- Size range
- >200
- Extraction method
- Trizol
- Fragmentation methods
- chemical (Illumina TruSeq)
- Size selection method
- SPRI beads
- Strand specificity
- Strand-specific (reverse)
- Spike-ins datasets
- ENCSR449DXG
- Platform
- Illumina HiSeq 2000
Attribution
ENCODE3 project
- Lab
- Brenton Graveley, UConn
- Award
- U54HG007005 (Brenton Graveley, UConn)
- Project
- ENCODE
- External resources
- Aliases
- brenton-graveley:K562-E
- Date submitted
- June 30, 2014
- Date released
- October 1, 2015
- Reference Epigenome
- ENCSR612NLL
- Annotation (physical modeling)
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 2 | 1 | Homo sapiens K562 cell line | ENCBS864OKZ | ENCLB374EGQ |
| 1 | 1 | Homo sapiens K562 cell line | ENCBS538WJZ | ENCLB822JYE |