Experiment summary for ENCSR098GAO

doi:10.17989/ENCSR098GAO

Summary

Status
released
Assay
shRNA knockdown followed by RNA-seq (shRNA RNA-seq)
Control type
control
Biosample summary
Drosophila melanogaster strain mCherry_shRNA x da-Gal4 whole organism embryo 0-1.5 hours post synchronization at egg laying stage expressing RNAi targeting mCherry
Biosample Type
whole organisms
Replication type
isogenic
Nucleic acid type
RNA
Depleted in
polyadenylated mRNA
Size range
350-600
Extraction method
Trizol
Fragmentation methods
shearing (Covaris generic)
Strand specificity
unstranded

Attribution

modERN project
Lab
Susan Celniker, LBNL
Award
U41HG007355 (Robert Waterston, UW)
Project
modERN
Aliases
susan-celniker:CG9876_Hr51_mCherry_0-1.5
Date submitted
March 15, 2019
Date released
April 25, 2019
Submitter comment
Processed data is currently not available for these experiments, but will be added in the future.

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Library
11Drosophila melanogaster strain mCherry_shRNA x da-Gal4 embryo 0-1.5 hours post synchronization at egg laying stage whole organism expressing RNAi targeting mCherryENCBS956ODRENCGM618RBJENCLB136KJG
21Drosophila melanogaster strain mCherry_shRNA x da-Gal4 embryo 0-1.5 hours post synchronization at egg laying stage whole organism expressing RNAi targeting mCherryENCBS677VSJENCGM618RBJENCLB649XUY