Experiment summary for ENCSR080JTU
doi:10.17989/ENCSR080JTU
Summary
- Status
- released
- Assay
- HiC (in situ Hi-C)
- Biosample summary
- Mus musculus strain Patski Patski
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- in-situ MboI Patski experiment
- Nucleic acid type
- DNA
- Library starting quantity
- 3000000cells [3-1]2500000cells [1-3]3000000cells [2-2]5000000cells [1-1]2500000cells [1-2]3000000cells [2-3]3000000cells [2-1]3000000cells [2-4]
- Size range
- 300-500
- Fragmentation methods
- chemical (MboI restriction)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 2500
Attribution
ENCODE4 project
- Lab
- Erez Aiden, Baylor
- Award
- UM1HG009375 (Erez Aiden, Baylor)
- Project
- ENCODE
- External resources
- Aliases
- erez-aiden:NCD-experiment-patski-mboI-insitu-biorep
- Date submitted
- October 19, 2018
- Date released
- October 29, 2018
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 3 | 1 | Mus musculus strain Patski Patski cell line | ENCBS380LVP | ENCLB074JYK |
| 1 | 3 | Mus musculus strain Patski Patski cell line | ENCBS954KGH | ENCLB336JUN |
| 2 | 2 | Mus musculus strain Patski Patski cell line | ENCBS912AOM | ENCLB847UXH |
| 1 | 1 | Mus musculus strain Patski Patski cell line | ENCBS954KGH | ENCLB190CHX |
| 1 | 2 | Mus musculus strain Patski Patski cell line | ENCBS954KGH | ENCLB498BDB |
| 2 | 3 | Mus musculus strain Patski Patski cell line | ENCBS912AOM | ENCLB901KXQ |
| 2 | 1 | Mus musculus strain Patski Patski cell line | ENCBS912AOM | ENCLB884ZEV |
| 2 | 4 | Mus musculus strain Patski Patski cell line | ENCBS912AOM | ENCLB018CFF |