Experiment summary for ENCSR067CAG

doi:10.17989/ENCSR067CAG

Summary

Status
released
Assay
siRNA knockdown followed by RNA-seq (siRNA RNA-seq)
Target
CTCF
Biosample summary
Homo sapiens K562 expressing RNAi targeting H. sapiens CTCF
Biosample Type
cell line
Replication type
isogenic
Description
RNA-seq on K562 cells treated with siRNA targeting CTCF.
Nucleic acid type
RNA
Size range
>200
Strand specificity
unstranded

Attribution

ENCODE3 project
Lab
Michael Snyder, Stanford
Award
U54HG006996 (Michael Snyder, Stanford)
Project
ENCODE
External resources
Aliases
sherman-weissman:E-K562-CTCF
Date submitted
August 1, 2016
Date released
October 9, 2016
Gene Silencing Series
ENCSR435WHD 
Tags
Search for all Experiment with internal tag ENCYCLOPEDIAv2

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Library
21Homo sapiens K562 cell line expressing RNAi targeting H. sapiens CTCFENCBS467YFZENCGM375MFRENCLB384RCE
11Homo sapiens K562 cell line expressing RNAi targeting H. sapiens CTCFENCBS741ESCENCGM375MFRENCLB371UHP