1. Experiments
  2. ChIP-seq
  3. Drosophila melanogaster
  4. whole organism

Experiment summary for ENCSR059YLP

doi:10.17989/ENCSR059YLP

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
CG4318
Biosample summary
Drosophila melanogaster strain CG4318-GFP whole organism prepupa (48 days) genetically modified (insertion) using site-specific recombination targeting D. melanogaster CG4318
Biosample Type
whole organisms
Replication type
isogenic
Description
ChIP-seq on transgenic flies expressing CG4318-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
Nucleic acid type
DNA
Size range
200-800
Fragmentation methods
sonication (Bioruptor generic)
Size selection method
SPRI beads
Controls

Attribution

modERN project
Lab
Kevin White, UChicago
Award
U41HG007355 (Robert Waterston, UW)
Project
modERN
External resources
Aliases
kevin-white:CG4318-GFP
Date submitted
December 21, 2016
Date released
January 11, 2017
Submitter comment
ENCFF393TLB, ENCFF583OTJ were revoked because a software bug accidentally truncated the file content. The submitters have provided replacement files.

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Antibody
Library
21Drosophila melanogaster strain CG4318-GFP mixed sex prepupa (48 days) whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster CG4318ENCBS645PROENCGM679ZOJENCAB728YTOENCLB066XER
31Drosophila melanogaster strain CG4318-GFP mixed sex prepupa (48 days) whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster CG4318ENCBS085SEUENCGM679ZOJENCAB728YTOENCLB881TLZ
11Drosophila melanogaster strain CG4318-GFP mixed sex prepupa (48 days) whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster CG4318ENCBS312BPZENCGM679ZOJENCAB728YTOENCLB578LZF

Files

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File format
Output type
Replicates

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