Experiment summary for ENCSR059IHA

doi:10.17989/ENCSR059IHA

Summary

Status
released
Assay
ATAC-seq
Biosample summary
Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 30 minutes
Biosample Type
in vitro differentiated cells
Replication type
unreplicated
Description
ATAC-seq
Treatments
100 ng/mL lipopolysaccharide (CHEBI:16412) for 30 minutes
Nucleic acid type
DNA
Size range
175-500
Extraction method
ATAC-seq (Greenleaf & Chang Lab protocol)

Attribution

Genomics of Gene Regulation Project
Lab
Manuel Garber, UMass
Award
U01HG007910 (Jeremy Luban, UMass)
Project
GGR
External resources
Aliases
manuel-garber:F33_MDDC_ATAC_Lps_30m_ATAC-seq
Date submitted
January 18, 2017
Date released
January 19, 2017
Annotation (gkmsvm-model)
Annotation (ChromBPNet-model)
Tags
Search for all Experiment with internal tag RegulomeDB_2_2

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Library
11Homo sapiens dendritic in vitro differentiated cells treated with 100 ng/mL lipopolysaccharide for 30 minutesENCBS550GVGENCLB300DIR