Experiment summary for ENCSR059IHA
doi:10.17989/ENCSR059IHA
Summary
- Status
- released
- Assay
- ATAC-seq
- Biosample summary
- Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 30 minutes
- Biosample Type
- in vitro differentiated cells
- Replication type
- unreplicated
- Description
- ATAC-seq
- Treatments
- 100 ng/mL lipopolysaccharide (CHEBI:16412) for 30 minutes
- Nucleic acid type
- DNA
- Size range
- 175-500
- Extraction method
- ATAC-seq (Greenleaf & Chang Lab protocol)
- Platform
- Illumina NextSeq 500
Attribution
Genomics of Gene Regulation Project
- Lab
- Manuel Garber, UMass
- Award
- U01HG007910 (Jeremy Luban, UMass)
- Project
- GGR
- External resources
- Aliases
- manuel-garber:F33_MDDC_ATAC_Lps_30m_ATAC-seq
- Date submitted
- January 18, 2017
- Date released
- January 19, 2017
- Annotation (gkmsvm-model)
- Annotation (ChromBPNet-model)
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
---|---|---|---|---|
1 | 1 | Homo sapiens dendritic in vitro differentiated cells treated with 100 ng/mL lipopolysaccharide for 30 minutes | ENCBS550GVG | ENCLB300DIR |