Experiment summary for ENCSR052FJA
doi:10.17989/ENCSR052FJA
Summary
- Status
- released
- Assay
- RNA-seq (total RNA-seq)
- Biosample summary
- Homo sapiens smooth muscle cell originated from H9
- Biosample Type
- in vitro differentiated cells
- Replication type
- isogenic
- Description
- The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
- Nucleic acid type
- RNA
- Depleted in
- rRNA
- Size range
- >200
- Fragmentation methods
- see document
- Strand specificity
- Strand-specific (reverse)
- Spike-ins datasets
- ENCSR156CIL
- Platform
- Illumina HiSeq 2000
Attribution
ENCODE3 project
- Lab
- Thomas Gingeras, CSHL
- Award
- U54HG007004 (Thomas Gingeras, CSHL)
- Project
- ENCODE
- External resources
- References
- Date submitted
- December 13, 2014
- Date released
- December 17, 2014
- Reference Epigenome
- ENCSR116JEF
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 1 | 1 | Homo sapiens female embryo (5 days) smooth muscle in vitro differentiated cells originated from H9 | ENCBS780PCJ | ENCLB113QPT |
| 2 | 1 | Homo sapiens female embryo (5 days) smooth muscle in vitro differentiated cells originated from H9 | ENCBS899TTJ | ENCLB391HFM |