Experiment summary for ENCSR042XCV
doi:10.17989/ENCSR042XCV
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- salr
- Biosample summary
- Drosophila melanogaster strain salr-GFP whole organism prepupa genetically modified (insertion) using site-specific recombination targeting D. melanogaster salr
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq on transgenic flies expressing salr-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Size range
- 200-800
- Fragmentation methods
- sonication (Bioruptor generic)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 2000
- Controls
Attribution
modERN project
- Lab
- Kevin White, UChicago
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:salr-GFP
- Date submitted
- August 3, 2016
- Date released
- September 29, 2016
- Submitter comment
- ENCFF579NCS, ENCFF343DPK, ENCFF981JTI, ENCFF608TVS were revoked because a software bug accidentally truncated the file content. The submitters have provided replacement files.
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
---|---|---|---|---|---|---|
1 | 1 | Drosophila melanogaster strain salr-GFP mixed sex prepupa whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster salr | ENCBS923KCJ | ENCGM677MWI | ENCAB728YTO | ENCLB718JTM |
2 | 1 | Drosophila melanogaster strain salr-GFP mixed sex prepupa whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster salr | ENCBS761IOB | ENCGM677MWI | ENCAB728YTO | ENCLB680PCP |
3 | 1 | Drosophila melanogaster strain salr-GFP mixed sex prepupa whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster salr | ENCBS353AKN | ENCGM677MWI | ENCAB728YTO | ENCLB407GKN |