Experiment summary for ENCSR042XCV

Summary

Status
released
Assay
ChIP-seq
Target
eGFP-salr
Biosample summary
Drosophila melanogaster VK00033 whole organism prepupa genetically modified using site-specific recombination
Biosample Type
whole organisms
Replication type
isogenic
Description
ChIP-seq on transgenic flies expressing salr-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
Nucleic acid type
DNA
Size range
200-800
Fragmentation method
sonication (Bioruptor generic)
Size selection method
SPRI
Strand specificity
Non-strand-specific
Controls

Attribution

modERN project
Lab
Kevin White, UChicago
Award
U41HG007355 (Robert Waterston, UW)
Project
modERN
Aliases
kevin-white:salr-GFP
Date submitted
August 3, 2016
Date released
September 29, 2016
Submitter comment
ENCFF579NCS, ENCFF343DPK, ENCFF981JTI, ENCFF608TVS were revoked because a software bug accidentally truncated the file content. The submitters have provided replacement files.

Isogenic replicates

Isogenic replicateTechnical replicateSummaryBiosampleModificationsAntibodyLibrary
11strain salr-GFP mixed sex prepupa whole organism genetically modified (insertion) using site-specific recombination targeting eGFP-salrENCBS923KCJENCGM677MWIENCAB728YTOENCLB718JTM
21strain salr-GFP mixed sex prepupa whole organism genetically modified (insertion) using site-specific recombination targeting eGFP-salrENCBS761IOBENCGM677MWIENCAB728YTOENCLB680PCP
31strain salr-GFP mixed sex prepupa whole organism genetically modified (insertion) using site-specific recombination targeting eGFP-salrENCBS353AKNENCGM677MWIENCAB728YTOENCLB407GKN