Experiment summary for ENCSR042GSX

doi:10.17989/ENCSR042GSX

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
SPDEF
Biosample summary
Homo sapiens MCF-7 genetically modified (insertion) using CRISPR targeting H. sapiens SPDEF
Biosample Type
cell line
Replication type
isogenic
Description
eGFP-SPDEF ChIP-seq on human MCF-7
Nucleic acid type
DNA
Size range
250-450
Fragmentation methods
sonication (Bioruptor Pico)

Attribution

ENCODE4 project
Lab
Michael Snyder, Stanford
Award
UM1HG009442 (Michael Snyder, Stanford)
Project
ENCODE
External resources
Aliases
michael-snyder:pCS-eGFP-SPDEF MCF-7 ChIP, michael-snyder:pCS-21
Date submitted
December 18, 2018
Date released
July 8, 2020
Annotation (gkmsvm-model)
Annotation (BPNet-model)
Tags
Search for all Experiment with internal tag RegulomeDB_2_2Search for all Experiment with internal tag RegulomeDB_2_1

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Antibody
Library
11Homo sapiens MCF-7 cell line genetically modified (insertion) using CRISPR targeting H. sapiens SPDEFENCBS939KMTENCGM607YQTENCAB728YTOENCLB438UWO
21Homo sapiens MCF-7 cell line genetically modified (insertion) using CRISPR targeting H. sapiens SPDEFENCBS397IRNENCGM607YQTENCAB728YTOENCLB466MVI