Experiment summary for ENCSR038DJJ
doi:10.17989/ENCSR038DJJ
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- SMAD1
- Biosample summary
- Homo sapiens K562
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- SMAD1 ChIP-seq on human K562
- Nucleic acid type
- DNA
- Size range
- 150-350
- Platform
- Illumina Genome Analyzer IIx
- Controls
Attribution
ENCODE3 project
- Lab
- Michael Snyder, Stanford
- Award
- U54HG006996 (Michael Snyder, Stanford)
- Project
- ENCODE
- External resources
- References
- Aliases
- michael-snyder:K562-SMAD1_600-401-B29_gaiix
- Date submitted
- July 4, 2014
- Date released
- July 7, 2014
- Annotation (gkmsvm-model)
- Annotation (physical modeling)
- Submitter comment
- We note that this ChIP-seq experiment was performed using an antibody for which we have provided a compliant primary characterization but no secondary characterization. A secondary characterization using IP-MS was attempted, but the experiment failed. There is no remaining antibody from this lot number and therefore additional secondary characterizations cannot be attempted. However, because the replicate ChIP-seq datasets passed the ENCODE IDR ChIP-seq data quality standards, we are releasing the data to the public.
- Tags
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Antibody | Library |
|---|---|---|---|---|---|
| 2 | 1 | Homo sapiens K562 cell line | ENCBS118YJZ | ENCAB000AYH | ENCLB114XYD |
| 1 | 1 | Homo sapiens K562 cell line | ENCBS489ZOH | ENCAB000AYH | ENCLB711TFY |