Experiment summary for ENCSR028UIU
doi:10.17989/ENCSR028UIU
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- ATF3
- Biosample summary
- Homo sapiens K562
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- ATF3 ChIP-seq on human K562
- Nucleic acid type
- DNA
- Size range
- 450-650
- Platform
- Illumina HiSeq 4000
- Controls
Attribution
ENCODE3 project
- Lab
- Michael Snyder, Stanford
- Award
- U54HG006996 (Michael Snyder, Stanford)
- Project
- ENCODE
- External resources
- References
- Aliases
- michael-snyder:ChIPss-379
- Date submitted
- July 7, 2016
- Date released
- July 8, 2016
- Annotation (gkmsvm-model)
- Annotation (BPNet-model)
- Submitter comment
- This experiment is being used in the ENCODE-DREAM Transcription Factor Binding Site Prediction Challenge (https://www.synapse.org/#!Synapse:syn6131484/wiki/400026). The files will be unavailable until after the challenge completes on 09-30-16. UPDATE: There will be a second round to the challenge that is expected to end on 01-11-2017. IMPORTANT: When this experiment was released for DREAM, it was matched with possible_control = ENCSR173USI, which was an input control sequenced on HiSeq2000. We have since associated an input control with matching sequencing platform (HiSeq4000) instead.
- Tags
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Antibody | Library |
|---|---|---|---|---|---|
| 2 | 1 | Homo sapiens K562 cell line | ENCBS320BUL | ENCAB548QXS | ENCLB439NIJ |
| 1 | 1 | Homo sapiens K562 cell line | ENCBS734NZL | ENCAB548QXS | ENCLB856XCJ |