Experiment summary for ENCSR028UIU

doi:10.17989/ENCSR028UIU

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
ATF3
Biosample summary
Homo sapiens K562
Biosample Type
cell line
Replication type
isogenic
Description
ATF3 ChIP-seq on human K562
Nucleic acid type
DNA
Size range
450-650

Attribution

ENCODE3 project
Lab
Michael Snyder, Stanford
Award
U54HG006996 (Michael Snyder, Stanford)
Project
ENCODE
External resources
Aliases
michael-snyder:ChIPss-379
Date submitted
July 7, 2016
Date released
July 8, 2016
Submitter comment
This experiment is being used in the ENCODE-DREAM Transcription Factor Binding Site Prediction Challenge (https://www.synapse.org/#!Synapse:syn6131484/wiki/400026). The files will be unavailable until after the challenge completes on 09-30-16. UPDATE: There will be a second round to the challenge that is expected to end on 01-11-2017. IMPORTANT: When this experiment was released for DREAM, it was matched with possible_control = ENCSR173USI, which was an input control sequenced on HiSeq2000. We have since associated an input control with matching sequencing platform (HiSeq4000) instead.
Tags
Search for all Experiment with internal tag RegulomeDB_2_0Search for all Experiment with internal tag DREAMSearch for all Experiment with internal tag RegulomeDB_1_0Search for all Experiment with internal tag ENCYCLOPEDIAv5

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Antibody
Library
21K562 cell lineENCBS320BULENCAB548QXSENCLB439NIJ
11K562 cell lineENCBS734NZLENCAB548QXSENCLB856XCJ