Experiment summary for ENCSR025GPQ
doi:10.17989/ENCSR025GPQ
Summary
- Status
- released
- Assay
- whole genome sequencing assay (WGS)
- Biosample summary
- Homo sapiens K562
- Biosample Type
- cell line
- Replication type
- unreplicated
- Description
- These data correspond to shotgun PE151 Illumina sequencing done on long insert fragmented gDNA from the K562 cell line
- Nucleic acid type
- DNA
- Library starting quantity
- 2.5µg
- Size range
- 2963-2963
- Extraction method
- QIAGEN DNeasy Blood & Tissue Kit
- Fragmentation methods
- chemical (Nextera tagmentation)
- Size selection method
- SPRI beads
- Platform
- Illumina NextSeq 500
- Controls
Attribution
Community submission
- Lab
- Alexander Urban, Stanford
- Award
- P50HG007735 (Alexander Urban, Stanford)
- Project
- community
- External resources
- Aliases
- alexander-urban:K562_matepair
- Date submitted
- July 18, 2016
- Date released
- December 19, 2017
- Submitter comment
- Paper describing these results: https://www.biorxiv.org/content/early/2017/12/02/192344
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 1 | 1 | Homo sapiens K562 cell line | ENCBS806UYV | ENCLB531FQO |