Experiment summary for ENCSR013VIR
doi:10.17989/ENCSR013VIR
Summary
- Status
- released
- Assay
- whole-genome shotgun bisulfite sequencing (WGBS)
- Biosample summary
- Mus musculus strain B6NCrl stomach tissue embryo (15.5 days)
- Biosample Type
- tissue
- Replication type
- isogenic
- Description
- Whole genome bisulfite-seq on embryonic 15.5 day mouse stomach
- Nucleic acid type
- DNA
- Size range
- 180-500
- Lysis method
- QIAGEN DNeasy Blood & Tissue Kit
- Fragmentation methods
- shearing (Covaris S2)
- Size selection method
- Sera-mag SpeedBeads
- Platform
- Illumina HiSeq 2500
Attribution
ENCODE3 project
- Lab
- Joe Ecker, Salk
- Award
- U54HG006997 (Bing Ren, UCSD)
- Project
- ENCODE
- External resources
- Aliases
- joe-ecker:E15_5_ST
- Date submitted
- April 29, 2015
- Date released
- June 23, 2015
- Organism Development Series
- ENCSR242GOA
- Reference Epigenome
- ENCSR379NJH
- Submitter comment
- Fastq files ENCFF746FFJ, ENCFF408CNQ, ENCFF094HWE, ENCFF536DPP contain reads of mixed lengths. Read lengths followed by respective number of reads: ENCFF746FF (130, 213087513), (133, 204427790); ENCFF408CNQ (130, 214495497), (133, 212527013); ENCFF094HWE (130, 402826530), (133, 214959523); ENCFF536DP (130, 419185433), (133, 206776117).
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 2 | 2 | Mus musculus strain B6NCrl mixed sex embryo (15.5 days) stomach tissue | ENCBS355TAQ | ENCLB491WCK |
| 2 | 1 | Mus musculus strain B6NCrl mixed sex embryo (15.5 days) stomach tissue | ENCBS355TAQ | ENCLB396CPQ |
| 1 | 1 | Mus musculus strain B6NCrl mixed sex embryo (15.5 days) stomach tissue | ENCBS915SZN | ENCLB568ODR |
| 1 | 2 | Mus musculus strain B6NCrl mixed sex embryo (15.5 days) stomach tissue | ENCBS915SZN | ENCLB519FIR |