Experiment summary for ENCSR012UKZ
doi:10.17989/ENCSR012UKZ
Summary
- Status
- released
- Assay
- HiC (in situ Hi-C)
- Biosample summary
- Mus musculus strain C57BL/6J mature B cell treated with 22.7 ng/mL trichostatin A for 4 hours
- Biosample Type
- primary cell
- Replication type
- isogenic
- Description
- in situ MboI Hi-C
- Treatments
- 22.7 ng/mL trichostatin A (CHEBI:46024) for 4 hours
- Nucleic acid type
- DNA
- Library starting quantity
- 5000000cells
- Size range
- 300-500
- Fragmentation methods
- chemical (MboI restriction)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq X Ten
Attribution
ENCODE4 project
- Lab
- Erez Aiden, Baylor
- Award
- UM1HG009375 (Erez Aiden, Baylor)
- Project
- ENCODE
- External resources
- Aliases
- erez-aiden:mouse-resting-B-cells-TSA
- Date submitted
- October 31, 2018
- Date released
- January 28, 2019
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 3 | 1 | Mus musculus strain C57BL/6J mature B primary cell treated with 22.7 ng/mL trichostatin A for 4 hours | ENCBS172KZR | ENCLB052LIP |
| 1 | 2 | Mus musculus strain C57BL/6J mature B primary cell treated with 22.7 ng/mL trichostatin A for 4 hours | ENCBS566OKR | ENCLB461LNS |
| 2 | 1 | Mus musculus strain C57BL/6J mature B primary cell treated with 22.7 ng/mL trichostatin A for 4 hours | ENCBS644KPQ | ENCLB500BEJ |
| 3 | 2 | Mus musculus strain C57BL/6J mature B primary cell treated with 22.7 ng/mL trichostatin A for 4 hours | ENCBS172KZR | ENCLB517JHW |
| 2 | 2 | Mus musculus strain C57BL/6J mature B primary cell treated with 22.7 ng/mL trichostatin A for 4 hours | ENCBS644KPQ | ENCLB049ZSU |
| 1 | 1 | Mus musculus strain C57BL/6J mature B primary cell treated with 22.7 ng/mL trichostatin A for 4 hours | ENCBS566OKR | ENCLB410FGW |