Experiment summary for ENCSR005UON
doi:10.17989/ENCSR005UON
Summary
- Status
- released
- Assay
- HiC (in situ Hi-C)
- Biosample summary
- Mus musculus strain B10.H-2aH-4bp/Wts CH12.LX
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- in situ MboI CH12.LX
- Nucleic acid type
- DNA
- Library starting quantity
- 6000000cells [1-1]6000000cells [1-2]6000000cells [1-5]6000000cells [1-3]1000000cells [1-9]1000000cells [1-10]6000000cells [1-4]6000000cells [1-6]1000000cells [1-7]1000000cells [1-8]1000000cells [1-11]
- Size range
- 300-500
- Fragmentation methods
- chemical (MboI restriction)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 2500
Attribution
ENCODE4 project
- Lab
- Erez Aiden, Baylor
- Award
- UM1HG009375 (Erez Aiden, Baylor)
- Project
- ENCODE
- External resources
- Aliases
- erez-aiden:weijie-experiment-insitu-ch12lx
- Date submitted
- January 18, 2019
- Date released
- January 28, 2019
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 1 | 1 | Mus musculus strain B10.H-2aH-4bp/Wts CH12.LX cell line | ENCBS455TUM | ENCLB351XQU |
| 1 | 2 | Mus musculus strain B10.H-2aH-4bp/Wts CH12.LX cell line | ENCBS455TUM | ENCLB102SAF |
| 1 | 5 | Mus musculus strain B10.H-2aH-4bp/Wts CH12.LX cell line | ENCBS455TUM | ENCLB571QEA |
| 1 | 3 | Mus musculus strain B10.H-2aH-4bp/Wts CH12.LX cell line | ENCBS455TUM | ENCLB670XZS |
| 1 | 9 | Mus musculus strain B10.H-2aH-4bp/Wts CH12.LX cell line | ENCBS455TUM | ENCLB367TVJ |
| 3 | 2 | Mus musculus strain B10.H-2aH-4bp/Wts CH12.LX cell line | ENCBS088WDO | ENCLB599LHL |
| 1 | 10 | Mus musculus strain B10.H-2aH-4bp/Wts CH12.LX cell line | ENCBS455TUM | ENCLB213TTV |
| 1 | 4 | Mus musculus strain B10.H-2aH-4bp/Wts CH12.LX cell line | ENCBS455TUM | ENCLB033TUK |
| 1 | 6 | Mus musculus strain B10.H-2aH-4bp/Wts CH12.LX cell line | ENCBS455TUM | ENCLB224IVZ |
| 1 | 7 | Mus musculus strain B10.H-2aH-4bp/Wts CH12.LX cell line | ENCBS455TUM | ENCLB181IOP |
| 1 | 8 | Mus musculus strain B10.H-2aH-4bp/Wts CH12.LX cell line | ENCBS455TUM | ENCLB560CZC |
| 1 | 11 | Mus musculus strain B10.H-2aH-4bp/Wts CH12.LX cell line | ENCBS455TUM | ENCLB902ARV |
| 2 | 1 | Mus musculus strain B10.H-2aH-4bp/Wts CH12.LX cell line | ENCBS708XQN | ENCLB914KEK |
| 2 | 2 | Mus musculus strain B10.H-2aH-4bp/Wts CH12.LX cell line | ENCBS708XQN | ENCLB370FRR |
| 3 | 1 | Mus musculus strain B10.H-2aH-4bp/Wts CH12.LX cell line | ENCBS088WDO | ENCLB696FKM |