Experiment summary for ENCSR000FBB
doi:10.17989/ENCSR000FBB
Summary
- Status
- released
- Assay
- ChIP-seq (Control ChIP-seq)
- Control type
- input library
- Biosample summary
- Homo sapiens K562 treated with Interferon gamma for 30 minutes
- Biosample Type
- cell line
- Replication type
- unreplicated
- Description
- Encode 4 pipeline runs had more severe audits compared to the ENCODE3 runs. Control ChIP-seq on human K562 treated with IFNg for 30 minutes
- Treatments
- Interferon gamma (UniProtKB:P01579) for 30 minutes
- Nucleic acid type
- DNA
- Fragmentation methods
- see document
- Platform
- Illumina Genome Analyzer
Attribution
ENCODE2 project
- Lab
- Sherman Weissman, Yale
- Award
- U54HG004558 (Michael Snyder, Stanford)
- Project
- ENCODE
- External resources
- Date submitted
- December 2, 2010
- Date released
- October 29, 2011
- Submitter comment
- Fastq file ENCFF000YPM contains reads of mixed lengths. Read lengths followed by respective number of reads: (27, 10403053), (34, 16542273).
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 1 | 1 | Homo sapiens K562 cell line treated with Interferon gamma for 30 minutes | ENCBS788AAA | ENCLB723GXA |