Experiment summary for ENCSR000EYC
Superseded by ENCSR618HNF
Summary
- Status
- revoked
- Assay
- ChIP-seq
- Target
- TRIM28
- Biosample summary
- Homo sapiens U2OS
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- TRIM28 ChIP-seq on human U2OS
- Nucleic acid type
- DNA
- Lysis method
- see document
- Extraction method
- see document
- Fragmentation method
- see document
- Size selection method
- see document
- Strand specificity
- Non-strand-specific
- Controls
Attribution
ENCODE2 project
- Lab
- Peggy Farnham, USC
- Award
- U54HG004558 (Michael Snyder, Stanford)
- Project
- ENCODE
- External resources
- Date released
- October 29, 2011
- Submitter comment
- Fastq file ENCFF000ZTO contains reads of mixed lengths. Read lengths followed by respective number of reads: (32, 31965684), (36, 27699624). Analysis showed this is HEK293 and not U2OS.
- Tags
Isogenic replicates
| Isogenic replicate | Technical replicate | Summary | Biosample | Antibody | Library |
|---|---|---|---|---|---|
| 1 | 1 | U2OS cell line | ENCBS266AAA | ENCAB000AIE | ENCLB655BKS |
| 2 | 1 | U2OS cell line | ENCBS200HLU | ENCAB000AIE | ENCLB859OJA |