Experiment summary for ENCSR000EYC

Superseded by ENCSR618HNF

Summary

Status
revoked
Assay
ChIP-seq
Target
TRIM28
Biosample summary
Homo sapiens U2OS
Biosample Type
cell line
Replication type
isogenic
Description
TRIM28 ChIP-seq on human U2OS
Nucleic acid type
DNA
Lysis method
see document
Extraction method
see document
Fragmentation method
see document
Size selection method
see document
Strand specificity
Non-strand-specific
Controls

Attribution

ENCODE2 project
Lab
Peggy Farnham, USC
Award
U54HG004558 (Michael Snyder, Stanford)
Project
ENCODE
Date released
October 29, 2011
Submitter comment
Fastq file ENCFF000ZTO contains reads of mixed lengths. Read lengths followed by respective number of reads: (32, 31965684), (36, 27699624). Analysis showed this is HEK293 and not U2OS.
Tags
Search for all Experiment with internal tag ENCYCLOPEDIAv4

Isogenic replicates

Isogenic replicateTechnical replicateSummaryBiosampleAntibodyLibrary
11U2OS cell lineENCBS266AAAENCAB000AIEENCLB655BKS
21U2OS cell lineENCBS200HLUENCAB000AIEENCLB859OJA