1. Experiments
  2. DNase-seq
  3. Homo sapiens
  4. bronchial epithelial cell

Experiment summary for ENCSR000EPN

doi:10.17989/ENCSR000EPN

Summary

Status
released
Assay
DNase-seq
Biosample summary
Homo sapiens bronchial epithelial cell female treated with 6 μM retinoic acid for 48 hours
Biosample Type
primary cell
Replication type
isogenic
Description
DNase-seq on human NHBE treated with 6uM retinoic acid for 48 hours
Treatments
6 μM retinoic acid (CHEBI:26536) for 48 hours
Nucleic acid type
DNA
Fragmentation methods
see document

Attribution

ENCODE2 project
Lab
John Stamatoyannopoulos, UW
Award
U54HG004592 (John Stamatoyannopoulos, UW)
Project
ENCODE
Date submitted
January 11, 2011
Date released
March 6, 2012
Annotation (gkmsvm-model)
Tags
Search for all Experiment with internal tag RegulomeDB_1_0Search for all Experiment with internal tag ccre_inputv2Search for all Experiment with internal tag RegulomeDB_2_0Search for all Experiment with internal tag RegulomeDB_2_1Search for all Experiment with internal tag ccre_inputv1Search for all Experiment with internal tag ENCYCLOPEDIAv2Search for all Experiment with internal tag ENCYCLOPEDIAv1Search for all Experiment with internal tag RegulomeDB_2_2

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Library
11Homo sapiens female bronchial epithelial primary cell treated with 6 μM retinoic acid for 48 hoursENCBS562ENCENCLB562ZZZ
21Homo sapiens female bronchial epithelial primary cell treated with 6 μM retinoic acid for 48 hoursENCBS638NGVENCLB561ZZZ

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