Experiment summary for ENCSR000EIT

doi:10.17989/ENCSR000EIT

Summary

Status
released
Assay
DNase-seq
Biosample summary
Homo sapiens GM03348 genetically modified (insertion) using transduction targeting H. sapiens MYOD1 treated with 3 μg/mL doxycycline for 10 days
Biosample Type
cell line
Replication type
unreplicated
Description
DNase-seq on human fibroblast (GM03348) treated with lentiviral MyoD
Treatments
3 μg/mL doxycycline (CHEBI:50845) for 10 days
Nucleic acid type
DNA
Fragmentation methods
see document

Attribution

ENCODE2 project
Lab
Gregory Crawford, Duke
Award
U54HG004563 (Gregory Crawford, Duke)
Project
ENCODE
Date submitted
January 11, 2011
Date released
August 28, 2012
Annotation (gkmsvm-model)
Tags
Search for all Experiment with internal tag RegulomeDB_2_2Search for all Experiment with internal tag RegulomeDB_2_1Search for all Experiment with internal tag RegulomeDB_1_0Search for all Experiment with internal tag ENCYCLOPEDIAv2Search for all Experiment with internal tag RegulomeDB_2_0

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Library
11Homo sapiens GM03348 cell line genetically modified (insertion) using transduction targeting H. sapiens MYOD1 treated with 3 μg/mL doxycycline for 10 daysENCBS558ENCENCGM883SVNENCLB443LVF
12Homo sapiens GM03348 cell line genetically modified (insertion) using transduction targeting H. sapiens MYOD1 treated with 3 μg/mL doxycycline for 10 daysENCBS558ENCENCGM883SVNENCLB067NZK