Experiment summary for ENCSR000EAW
doi:10.17989/ENCSR000EAW
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- RELA
- Biosample summary
- Homo sapiens GM18505 treated with 25 ng/mL tumor necrosis factor for 6 hours
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- RELA ChIP-seq on human GM18505 treated with TNFa
- Treatments
- 25 ng/mL tumor necrosis factor (UniProtKB:P01375) for 6 hours
- Nucleic acid type
- DNA
- Fragmentation methods
- see document
- Platform
- Illumina Genome Analyzer
- Controls
Attribution
ENCODE2 project
- Lab
- Michael Snyder, Stanford
- Award
- U54HG004558 (Michael Snyder, Stanford)
- Project
- ENCODE
- External resources
- Date submitted
- October 29, 2011
- Date released
- October 29, 2011
- Submitter comment
- ENCODE4 pipeline failed at chip.align step.
- Tags
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Antibody | Library |
|---|---|---|---|---|---|
| 3 | 1 | Homo sapiens GM18505 cell line treated with 25 ng/mL tumor necrosis factor for 6 hours | ENCBS499ENC | ENCAB000AJG | ENCLB209AKY |
| 5 | 1 | Homo sapiens GM18505 cell line treated with 25 ng/mL tumor necrosis factor for 6 hours | ENCBS499ENC | ENCAB000AJG | ENCLB209AQL |
| 4 | 1 | Homo sapiens GM18505 cell line treated with 25 ng/mL tumor necrosis factor for 6 hours | ENCBS499ENC | ENCAB000AJG | ENCLB209AQM |